lemm:publicaciones [Cátedra de Microbiología]

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====== Publicaciones ======

===== 2022 =====

| Pereira-Mora, L., Terra, J.A., Fernández-Scavino, A. (2022) **Methanogenic community linked to organic acids fermentation from root exudates are affected by rice intensification in rotational soil systems.** //Appl. Soil Ecol. // [[https://doi.org/10.1016/j.apsoil.2022.104498|{{:boton_pdf.png?30|Ver el artículo}}]] |

| Fernández-Scavino A, Oreggioni D, Martínez-Pereyra A, Tarlera S, Terra JA and Irisarri P. (2022) **Season and No-Till Rice Crop Intensification Affect Soil Microbial Populations Involved in CH4 and N2O Emissions.** //Front. Soil Sci. // [[https://doi.org/10.3389/fsoil.2022.832600|{{:boton_pdf.png?30|Ver el artículo}}]] |

| Roldán D. M., Carrizo D., Sánchez-García L. & Menes R. J. (2022) **Diversity and effect of increasing temperature on the activity of methanotrophs in sediments of Fildes Peninsula freshwater lakes, King George Island, Antarctica.** //Front. Microbiol. // [[https://doi.org/10.3389/fmicb.2022.822552|{{:boton_pdf.png?30|Ver el artículo}}]] |

| Roldán D. M., Costa A., Králová S., Busse H-J, Amarelle V., Fabiano E. & Menes R. J. (2022) **//Paenibacillus farraposensis// sp. nov., isolated from a root nodule of Arachis villosa.** //Int. J. Syst. Evol. Microbiol. // [[https://doi.org/10.1099/ijsem.0.005294|{{:boton_pdf.png?30|Ver el artículo}}]] |

===== 2021 =====

| Menes R. J., Machin, E. V., Roldán D. M., Kyrpides N., Woyke T., Shapiro N., Whitman W.B. & Busse H-J. (2021) **//Frigoriflavimonas asaccharolytica// gen. nov., sp. nov., a novel psychrophilic esterase and protease producing bacterium isolated from Antarctica.** //Antonie van Leeuwenhoek.// [[https://doi.org/10.1007/s10482-021-01656-x|{{:boton_pdf.png?30|Ver el artículo}}]] |

| Roldán DM, Kyrpides N, Woyke T, Shapiro N, Whitman WB, Králová S, Sedláček I, Busse HJ, Menes RJ (2021) **//Hymenobacter caeli// sp. nov., an airborne bacterium isolated from King George Island, Antarctica** //Int J Syst Evol Microbiol // [[https://doi.org/10.1099/ijs.0.004838-0|{{:boton_pdf.png?30|Ver el artículo}}]] |

| Menes, RJ (2021) **Genus //Halopeptonella//** //Bergey's Manual of Systematics of Archaea and Bacteria. New York, USA. John Wiley & Sons Ltd. 2021// [[|{{:boton_pdf.png?30|Ver el artículo}}]] |


===== 2020 =====

| Roldán DM, Kyrpides N, Woyke T, Shapiro N, Whitman WB, Králová S, Sedláček I, Busse HJ, Menes RJ (2020) **//Hymenobacter artigasi// sp. nov., isolated from air sampling in maritime Antarctica** //Int J Syst Evol Microbiol // [[https://doi.org/10.1099/ijsem.0.004362|{{:boton_pdf.png?30|Ver el artículo}}]] |

| Menes RJ, Machin EV, Iriarte A, Langleib M (2020) **//Bacillus natronophilus// sp. nov., an alkaliphilic bacterium isolated from a soda lake.** //Int J Syst Evol Microbiol.// [[https://doi.org/10.1099/ijsem.0.003792|{{:boton_pdf.png?30|Ver el artículo}}]] |


===== 2019 =====

| Carrizo D, Sánchez-García L, Menes RJ, García-Rodríguez F (2019) **Discriminating sources and preservation of organic matter in surface sediments from five Antarctic lakes in the Fildes Peninsula (King George Island) by lipid biomarkers and compound-specific isotopic analysis.** //Science of the Total Environment // [[https://doi.org/10.1016/j.scitotenv.2019.03.459 |{{:boton_pdf.png?30|Ver el artículo}}]] |

| Machin EV, Asem MD, Salam N, Iriarte A, Langleib M, Li WJ, Menes RJ (2019) **//Nesterenkonia natronophila// sp. nov., an alkaliphilic actinobacterium isolated from a soda lake, and emended description of the genus //Nesterenkonia//.** //Int J Syst Evol Microbiol.// [[https://doi.org/10.1099/ijsem.0.003409 |{{:boton_pdf.png?30|Ver el artículo}}]] |

| Oreggioni D., Ferrando L., Tarlera S., Menes R.J., Garmendia G., Martínez A., Pereira Mora L., Ghiazza C., Gonda M., Fernández Scavino A. (2019) **Una estrategia en la enseñanza universitaria de microbiología para estudiantes con trayectorias transversales.** //Aldeq - Anuario Latinoamericano de Educación Química, v.: XXXIII//

===== 2018 =====

| Di Salvo L., Ferrando L., Fernández Scavino A., García de Salamone IE (2018) **Microorganisms reveal what plants do not: wheat growth and rhizosphere microbial communities after //Azospirillum brasilense// inoculation and nitrogen fertilization under field conditions.** //Plant and Soil // [[https://doi.org/10.1007/s11104-017-3548-7  |{{:boton_pdf.png?30|Ver el artículo}}]] |

| Barrau C, Di Lorenzo F, Menes RJ, Lanzetta R, Molinaro A, Silipo A (2018) **The Structure of the Lipid A from the Halophilic //Bacterium Spiribacter// salinus M19-40T.** //Mar Drugs.// [[https://www.mdpi.com/1660-3397/16/4/124# |{{:boton_pdf.png?30|Ver el artículo}}]] |

| Bellini MI, Kumaresan D,  Tarlera S, Murrel C, Fernández Scavino A (2018) **Identification of active denitrifiers by DNA-Stable Isotope Probing and amplicon sequencing reveals //Betaproteobacteria// as responsible for attenuation of nitrate contamination in a low impacted aquifer.** //FEMS Microbiology Ecology// [[https://doi.org/10.1093/femsec/fix181
 |{{:boton_pdf.png?30|Ver el artículo}}]] |

===== 2017 =====

| Yuan Q, Hernandez M, Dumont MG, Rui J, Fernández Scavino A, Conrad R (2017) **Microorganisms reveal what plants do not: wheat growth and rhizosphere microbial communities after //Azospirillum brasilense// inoculation and nitrogen fertilization under field conditions.** //Plant and Soil // [[https://doi.org/10.1016/j.soilbio.2017.10.004  |{{:boton_pdf.png?30|Ver el artículo}}]] |

| Rariz G., Ferrando L., Echegoyen N., Fernández Scavino A.(2017) **Antagonism between //Azospirillum brasilense// Az39 and //Pseudomonas oryzihabitans//, a seed-borne endophyte, in growing rice plants** //Revista Agronómica del Noroeste Argentino// [[https://ranar.faz.unt.edu.ar/index.php/ranar/article/view/55 |{{:boton_pdf.png?30|Ver el artículo}}]] |

===== 2016 =====

| Tarlera S., Capurro M.C., Irisarri P., Fernández Scavino A., Cantou G., Roel A. 2016. **Yield-scaled global warming potential of two irrigation management systems in a highly productive rice system.** //Scientia Agricola// 73(1): 43-50. | [[http://dx.doi.org/10.1590/0103-9016-2015-0050|{{:boton_pdf.png?90|Ver el artículo}}]] |


===== 2015 =====

| Menes R.J., Viera C.E., Farias M.E., Seuherffeld M.J. 2015. **//Halopeptonella vilamensis// gen. nov, sp. nov., a halophilic strictly aerobic bacterium of the family //Ectothiorhodospiraceae//.** //Extremophiles.// 20(1):19–25 |  [[http://dx.doi.org/10.1007/s00792-015-0793-7|{{:boton_pdf.png?90|Ver el artículo}}]] |
| Ferrando L.,  Fernández Scavino A. 2015. ** Strong shift in the diazotrophic endophytic bacterial community inhabiting rice (//Oryza sativa//) plants after flooding.**  //FEMS Microbiol Ecol.// 91(9):fiv104 | [[http://dx.doi.org/10.1093/femsec/fiv104|{{:boton_pdf.png?90|Ver el artículo}}]] |
| Jijón-Moreno S., Marcos-Jiménez C, Pedraza R.O., Ramírez-Mata A.; García de Salamone I., Fernández Scavino A., Vázquez-Hernández C.A., Soto-Urzúa L., Baca B.E. 2015. **The ipdC, hisC1 and hisC2 genes involved in indole-3-acetic production used as alternative phylogenetic markers in //Azospirillum brasilense//.** //Antonie van Leeuwenhoek// 107(6): 1501-1517 | [[http://dx.doi.org/10.1007/s10482-015-0444-0|{{:boton_pdf.png?90|Ver el artículo}}]] |
| Ji Y., Fernández Scavino A., Klose M., Claus P., Conrad R., 2015. **Functional and structural responses of methanogenic microbial communities in Uruguayan soils to intermittent drainage.** //Soil Biology and Biochemistry//  89:238-247 |[[http://dx.doi.org/10.1016/j.soilbio.2015.07.015|{{:boton_pdf.png?90|Ver el artículo}}]] |


===== 2014 =====

| Conrad, R., Claus, P., Chidthaisong, A., Lu, Y., Fernandez Scavino, A., Liu, Y.,  Angel, R., Galand, P.E., Casper, P., Guerin, F., Enrich-Prast, A. 2014. **Stable carbon isotope biogeochemistry of propionate and acetate in methanogenic soils and lake sediments** //Org Geochem// 73: 1-7 |  [[http://dx.doi.org/10.1016/j.orggeochem.2014.03.010|{{:boton_pdf.png?65|Ver el artículo}}]] |
| Bellini, M.I., Pinelli, L., Dos Santos, M.E., Fernández Scavino, A. 2014. **Bacterial consortia from raw water and sludges from water potabilization plants are able to degrade atrazine**  //Int Biodet Biodeg// 90: 131-139 | [[http://dx.doi.org/10.1016/j.ibiod.2014.02.011|{{:boton_pdf.png?65|Ver el artículo}}]] |
| Ohanian, M., Díaz, V., Corengia, M., Russi, P., Pianzzola, M.J., Menes, R.J. 2014. **Estudio de la influencia microbiológica en la corrosión de latones (UNS C68700, UNS C443) y acero inoxidable AISI 316** //Rev Metal// 70(2): e014 |[[http://revistademetalurgia.revistas.csic.es/index.php/revistademetalurgia/article/viewArticle/1319/1363|{{:boton_pdf.png?65|Ver el artículo}}]] |

===== 2013 =====

| Bellini, M.I., Gutiérrez, L., Tarlera, S., Fernández Scavino, A. 2013. **Isolation and functional analysis of denitrifiers in an aquifer with high potential for denitrification** //Syst Appl Microbiol// 36: 505-516. | [[http://dx.doi.org/10.1016/j.syapm.2013.07.001|{{:boton_pdf.png?70|Ver el artículo}}]] |
| Fernández Scavino, A., Ji, Y., Pump, J., Klose, M., Claus, P., Conrad, R. 2013. **Structure and function of the methanogenic microbial communities in Uruguayan soils shifted between pasture and irrigated rice fields** //Environ Microbiol// 15: 2588-2602. | [[http://dx.doi.org/10.1111/1462-2920.12161|{{:boton_pdf.png?70|Ver el artículo}}]] |
| Fernández Scavino, A., Pedraza, R.O. 2013. **The role of siderophores in plant growth-promoting bacteria** En: D.K. Maheshwari, M.Saraf, A. Aeron (eds), pp. 265-285. //“Bacteria in Agrobiology: Crop Productivity"//. Springer-Verlag, Berlin Heidelberg. | [[http://dx.doi.org/10.1007/978-3-642-37241-4_11|{{:boton_pdf.png?70|Ver el artículo}}]] |
| Ferrando, L., Fernández Scavino,  A. 2013. **Functional diversity of endophytic bacteria**, Cap 12. En: Aroca, R. (ed), pp. 195-211. //“Symbiotic Endophytes”//, Soil Biology Series, Springer. | [[http://dx.doi.org/10.1007/978-3-642-39317-4_10|{{:boton_pdf.png?70|Ver el artículo}}]] |
| Rariz, G., Martínez, A.,Ferrando, F., Menes, R.J., Fernández Scavino, A. 2013. **Caracterización e interacciones entre bacterias con propiedades promotoras de crecimiento vegetal asociadas al cultivo de arroz**. //Revta Agron N O Argent// 33 (2): 13-24. | [[http://www.faz.unt.edu.ar/images/stories/rana/RANA%203323.pdf|{{:boton_pdf.png?70|Ver el artículo}}]] |
| Da Cunha, J., Pinelli, L., Bellini, M.I., Davyt, D., Fernández-Scavino, A. 2013. **Determinación de atrazina e intermediarios de biodegradación en enriquecimientos bacterianos provenientes de cursos de agua superficial de Uruguay**. //Revista del Laboratorio Tecnológico del Uruguay INNOTEC// 8: 23 – 29. | [[http://ojs.latu.org.uy/index.php/INNOTEC/article/view/215|{{:boton_pdf.png?70|Ver el artículo}}]] |


===== 2012 =====

| García de Salamone, I.E., Funes, J.M., Di Salvo, L.P., Escobar-Ortega, J.S., Dáuria, F., Ferrando, L., Fernández Scavino, A. 2012. **Inoculation of paddy rice with Azospirillum brasilense and Pseudomonas fluorescens: Impact of plant genotypes on rhizosphere microbial communities and field crop production** //Appl Soil Ecol// 61: 196-104. |
| Ferrando, L., Fernández Mañay, J., Fernández Scavino, A. 2012. **Molecular and culture-dependent analyses revealed similarities in the endophytic bacterial community composition of leaves from three rice //**(Oryza sativa)**// varieties**. //FEMS Microbiol Ecol//  80: 696-708. |
| Irisarri, P., Pereyra, V., Fernández, A., Terra, J., Tarlera, S. 2012. **Emisiones de CH<sub>4</sub> y N<sub>2</sub>O en un arrozal: primeras medidas en el sistema productivo uruguayo** //Agrociencia Uruguay// 16, 2:1-10.|
===== 2011 =====

| Loaces, I., Ferrando, L., Fernández Scavino, A. 2011. **Dynamics, diversity and function of endophytic siderophore-producing bacteria in rice** //Microbial Ecol// 61: 606 – 618. | [[http://dx.doi.org/10.1007/s00248-010-9780-9|{{:boton_pdf.png?40|Ver el artículo}}]] |
| Menes, R.J., Viera, C., Farías, M.E., Seufferheld, M.J. 2011. **//Halomonas vilamensis// sp. nov., isolated from high-altitude Andean lakes** //Int J Syst Evol Microbiol// 61: 1211 – 1217. | [[http://dx.doi.org/10.1099/ijs.0.023150-0|{{:boton_pdf.png?40|Ver el artículo}}]] |
| Geymonat, E., Ferrando, L., Tarlera, S. 2011. **//Methylogaea oryzae// gen. nov., sp. nov., a mesophilic methanotroph isolated from a rice paddy field** //Int J Syst Evol Microbiol// 61, 2568-2572. | [[http://dx.doi.org/10.1099/ijs.0.028274-0|{{:boton_pdf.png?40|Ver el artículo}}]] |



===== 2010 =====

| Fernández, A., Ferrando, L., Menes, J., Tarlera, S. 2010. **Bacterial community analysis of the water surface layer from a rice-planted and an unplanted flooded field** //Braz J Microbiol// 41: 411 – 419. | [[http://dx.doi.org/10.1590/S1517-83822010000200023|{{:boton_pdf.png?70|Ver el artículo}}]] |
| Chakkiath,  PA , D. Kumaresan , L. Ferrando , R. Boden , H. Moussard , A. Fernández Scavino  Y. Shouche, C. Murrell. 2010. **Active methylotrophs in the sediments of Lonar Lake, a saline and alkaline ecosystem formed by meteor impact** //The ISME Journal// 4: 1470-1480. | [[http://dx.doi.org/10.1038/ismej.2010.70|{{:boton_pdf.png?70|Ver el artículo}}]] |

===== Anteriores al 2009 =====

| Lareo, C., Ares, G., Ferrando, L., Lema, P., Gámbaro, A., Soubes, M. 2009. Influence of temperature on the shelf life of butterhead lettuce in passive modified atmosphere packages. Journal of Food Quality. 32: 240- 261. ||
| Loperena, L., Ferrari, M.D., Díaz, A.L., Ingold, G., Pérez, L.V. Carvallo, F. Travers, D. Menes, R.J. Lareo, C. 2009. Isolation and selection of native microorganisms for the aerobic treatment of simulated dairy wastewaters. Bioresource Technol 100(5), 1762-1766. ||
| Tarlera, S., Pereyra, V., Fernández, A. 2009. Emisiones de metano y oxido nitroso en la rotación arroz-pastura. En: Irisarri, Pilar (ed), Emisiones de metano y óxido nitroso: principales gases de efecto invernadero producidos por el sector agropecuario en Uruguay, pp. 69 – 79. Publicado por la Facultad de Agronomía, UdelaR, Montevideo. ||
| Ferrando, L., Tarlera, S.  2008. Activity and diversity of methanotrophs in the soil–water interface and rhizospheric soil from a flooded temperate rice field. J Appl Microbiol 106, 306-316. | [[http://dx.doi.org/10.1111/j.1365-2672.2008.04004.x|{{:boton_pdf.png?50|Ver el artículo}}]] |
| Tarlera, S., Jangid, K., Ivester, A.H., Whitman, W.B. Williams, M.A. 2008.  Microbial community succession and bacterial diversity in soils during 77000 years of ecosystem development.  FEMS Microbiol Ecol 64, 129–140 | [[http://dx.doi.org/10.1111/j.1574-6941.2008.00444.x|{{:boton_pdf.png?50|Ver el artículo}}]] |
| Loperena, L., Ferrari, M.D., Saravia, V., Murro, D., Lima, C., Ferrando, L., Fernández, A., Lareo C. 2007. Performance of a commercial inoculum for the aerobic biodegradation of a high fat content dairy wastewater. Bioresource Technology, 98(5):1045-51. ||
| Kieling, D., Reginatto, V., Schmidell, W., Travers, D., Menes, R.J., Soares, H.M. 2007. Sludge wash-out as strategy for anammox process start-up. Process Biochem 42(12): 1579-1585. ||
| Gutierrez, S., Ferrari, A., Benítez A., Travers, D., Menes, J., Etchebehere, C., Canetti ,R. 2007. Long term evaluation of a sequential batch reactor treating dairy wastewater for carbon removal. Water Sci Technol 55(10): 193-199. ||
| Menes, J. Principios básicos de biología molecular (Cap. II.3), Principios básicos de taxonomía en procariotas (Cap. II.4), Microbiología, ecología y bioquímica de ecosistemas metanogénicos (Cap. V.1), Técnicas de caracterización microbiológica (Cap. XI.2), Técnicas de medida de actividad metanogénica (Cap. XI.1.3), En: “Tratamento Biológico de Águas Residuárias”. 2007, Ed. Universidad Federal de Santa Catarina, Florianópolis, Brasil. Comisión Editorial: Willibaldo  Schmidell, Hugo Moreira Soares, Claudia Etchebehere, Javier Menes, Nora Cristina Bertola, Edgardo Contreras. ||
| Benítez, A., Ferrari A., Gutierrez, S., Canetti, R., Cabezas, A., Travers, D., Menes, J. Etchebehere, C. 2006. Sequencing batch reactors as a post-treatment of anaerobically treated dairy effluent. Water Sci Technol 54(2): 199–206. ||
| Menes, R.J.,Travers, D. 2006. Detection of fatty acid beta-oxidizing syntrophic bacteria by fluorescence in situ hybridization. Water Sci Technol 54(2): 33–39. ||
| Fernández Mañay, J., Ferrando, L., Macazaga, V., Fernández Scavino, A. 2005. Diversidad de bacterias endófitas en cultivos de arroz en Uruguay. Estudios preliminares. Agrociencia, Vol IX N°1 y N°2, 285- 290. ||
| Reginatto, V., Teixeira, R. M., Pereira, F., Schmidell, W., Furigo, Jr A., Menes, R., Etchebehere, C., Soares, H.M. 2005. Anaerobic ammonium oxidation in a bioreactor treating slaughterhouse wastewater. Braz J Chem Eng 22(4): 593-600. ||
| Tarlera, S., Denner, E. 2003. //Sterolibacterium denitrificans// gen. nov., sp. nov., a novel cholesterol-oxidizing, denitrifying member of the β-Proteobacteria. Int J Syst Evol Microbiol 53:  1085–1091. | [[http://dx.doi.org/10.1099/ijs.0.02039-0|{{:boton_pdf.png?50|Ver el artículo}}]] |
| Menes, R.J., Muxí, L. 2002. Anaerobaculum mobile sp. nov., a novel anaerobic, moderately thermophilic, peptide-fermenting bacterium that uses crotonate as an electron acceptor, and emended description of the genus //Anaerobaculum//. Int J Syst Evol Microbiol 52: 157-164. ||
| Menes, R. J.,  A. Fernández, Muxí, L. 2001. Physiological and molecular characterization of an anaerobic thermophilic oleate-degrading enrichment culture. Anaerobe 7: 17-24. ||
| Tiedje, J., Fernández, A., Hashsham, S., Dollhop, S., Dazzo, F., Hickey,R., Criddle, C. 2001. Stability, perisistence and resilience in anaerobic reactors: a community unveiled. In: Matsuo, Hanaki, Takisawa and Satoh (eds), P. 13-20, Advances in Water and Wastewater Treatment Technology, Elsevier, Amsterdam. ||
| Barrandeguy, E., Tarlera, S. 2001. Anaerobic oxidation of cholesterol by a denitrifying enrichment. Water Sci Technol 44:  145 – 150. ||
| Fernández, A., Huang, S. Seston, S. Xing,  J. Hickey, R. Criddle, C. Tiedje, J. 1999. How stable is stable: Function versus community composition. Appl Environ Microbiol 65: 3697-3704. ||
| Fernández, A., Hashsham, S. Dollhopf, S. L., Raskin, L., Glagoleva, O. Dazzo, F. B., Hickey, R. Criddle, C. S., Tiedje, J. M. 2000. Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose. Appl Environ Microbiol 66: 4058-4067. ||
| Tarlera, S., Stams, A. 1999. Degradation of proteins and amino acids by Caloramator proteoclasticus in pure culture and in co-culture with //Methanobacterium thermoformicicum// Z245. 1999. Appl Microbiol Biotechnol 53: 133 – 138. ||
| Tarlera, S., Muxi, L., Soubes, M., Stams, A. 1997.  //Caloramator proteoclasticus// sp. nov., a new moderately thermophilic anaerobic proteolytic bacterium. Int J Syst Evol Microbiol 47: 651 – 656. ||
| Soubes, M., Muxí, L., Fernández, A., Tarlera, S., Queirolo, M. 1994. Inhibition of methanogenesis from acetate by Cr<sup>+3</sup> and ammonia. Biotechnol Lett 16:195-200. ||
| Menes R.J., Fernández, A., Soubes, M. 1994. Toxicidad de nonilfenoletoxilados en Ecosistemas Anaerobios. III Taller Regional y Seminario Latinoamericano sobre "Tratamiento Anaerobio de Aguas Residuales en América Latina", Montevideo, octubre 1994. Ed. Graphis, Montevideo. ||










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